[Leish-l] PCR and Leish detection in sand flies

[Obenauer, Peter J. LCDR]

Thanks Dr. Hamarsheh for the insight!
r/

Peter J. Obenauer, Ph.D.
LCDR MSC USN
Head, Vector Biology Research Program
U.S. Naval Medical Research Unit No. 3
Cairo, Egypt
PSC 452, Box 154
FPO AE 09835-9998
Mobile: ++2.012.2401037
Fax: ++2.02.234.3090
peter.obenauer at med.navy.mil
* Cairo working days are Sunday-Thursday and 6 hours ahead of U.S.
Eastern Time



-----Original Message-----
From: Dr Omar Hamarsheh [mailto:ohamarsheh at gmail.com] 
Sent: Tuesday, July 12, 2011 1:56 PM
To: Hanafi, Hanafi CTR EG NAMRU3 ; 'Leish-L'
Cc: Obenauer, Peter J. LCDR; Kaldas, Rania M CIV EG NAMRU3
Subject: RE: [Leish-l] PCR and Leish detection in sand flies

Dear Dr Hanafi,

I would suggest the following:

1. the phenol-chloroform DNA extraction method generates small DNA amount
but of high quality
2. I personally do not believe in the use of sand fly pools, I prefer to use
single flies (more work but quality results). DNA of single flies may pooled
afterwards.
3. if DNA of blood fed sand flies is used in the PCR, it will generate
streaks, probably from blood or any other agents. I remember few years ago
when we tried to amplify DNA from blood fed sand flies we got all the time
streaks. Sand flies without blood in their guts or blood is already digested
and passed will be amplified very nicely if DNA is extracted with
phenol-chloroform method.
4. For smears: I think it is related to one of these problems:1) poor
quality of the DNA (2) The primers used may targeted nonspecifically both
sand fly DNA and Leishmania DNA if existed, since ribosomal genes of both
Leishmania and sand flies are multi copy. I think, if quality of DNA is
excluded; ITS1 primers used to characterize Leishmania species will amplify
nonspecifically sand fly DNA and this may mask the actual bands of
Leishmania if existed.